Contents:
ValidNucleotides
Strand
MutTypes
Tags
TaggerNamespaces
FlaggerNamespaces
TagSupportingReads
TagLowQualReads
TagFragmentReads
TagStutterDuplicateReads
AlignmentScoreTest
AnomalousDistributionTest
ProportionBasedTest
hairpin2()
ResultADF
validate_positive()
FixedParamsADF
test_adf()
FlaggerADF
ResultALF
FixedParamsALF
test_ALF()
FlaggerALF
FixedParamsDupmark
tag_dups()
TaggerDupmark
ResultDVF
FixedParamsDVF
test_DVF()
FlaggerDVF
QualParams
tag_lq()
TaggerLowQual
ResultLQF
FixedParamsLQF
test_variant_LQF()
FlaggerLQF
tag_overlap()
TaggerOverlap
tag_supporting()
TaggerSupporting
RunParamsShared