Contents:
ValidNucleotides
Strand
MutTypes
Tags
TaggerNamespaces
FlaggerNamespaces
TagSupportingReads
TagLowQualReads
TagFragmentReads
TagStutterDuplicateReads
AlignmentScoreTest
AnomalousDistributionTest
ProportionBasedTest
hairpin2()
JSONOrFile
ConfigFile
make_read_processor()
make_variant_flagger()
ReadAwareProcessProtocol
ReadAwareProcess
ProcessEngineProtocol
ReadTaggerEngine
VariantFlaggerEngine
ProcessKindEnum
FixedParams
RunParams
ConfigError
ExecutorError
ProcessError
RAExec
DataExtensionBase
record_operation()
mark_ext_obj()
ext_obj_has_mark()
ExtendedRead
make_extended_read()
mark_read()
read_has_mark()
ExtendedVariant
ReadView
TestOutcomes
FlagResult
ResultPackProtocol
VariantTestProtocol